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IB DP Biology Study Notes

1.5.1 Structural Features

Viruses, intriguing microscopic entities, often defy our understanding of life. While not classified as traditional living organisms, they display a myriad of structural attributes that empower them to infiltrate host cells and propagate. This section provides an in-depth analysis of the distinct structural features that typify viruses.

Size

  • General range: Viruses exhibit vast differences in size, with their diameters generally fluctuating between 20 to 300 nanometres (nm).
  • Comparison with Cells:
    • Bacteria: Bacterial cells predominantly range from 0.5 to 5.0 micrometres. This starkly highlights that even the largest viruses are still considerably smaller than the smallest bacterial cells.
    • Human Cells: Red blood cells, a common type of human cell, are about 6,000-8,000 nm in diameter, making them vastly larger than most viruses.
  • Significance: The minuscule size of viruses facilitates their ability to invade larger host cells and utilise their machinery for replication.
Image of virus- Simian virus.

Image courtesy of Phoebus87

Genetic Material

Every virus contains a core of genetic material, which can either be DNA or RNA. This genetic repository is the epicentre of the virus's infectious capabilities.

  • DNA Viruses:
    • Description: These viruses house DNA as their genetic material.
    • Examples: Herpes simplex, Smallpox, and Adenoviruses are prominent representatives.
    • Replication Site: DNA viruses typically replicate in the cell nucleus where host DNA replication and transcription occur.
  • RNA Viruses:
    • Description: RNA viruses encapsulate RNA as their hereditary substance.
    • Examples: Influenza, HIV, and Rhinoviruses are notable instances.
    • Replication Site: RNA viruses generally replicate in the cell's cytoplasm.
  • Variability in Strands:
    • Single-stranded (ss): Be it DNA or RNA, some viruses possess a singular, linear genetic strand.
    • Double-stranded (ds): Such viruses are equipped with two intertwined linear strands, forming the renowned double helix configuration.
A diagram of virus structure.

Image courtesy of skypicsstudio

Capsid Composition

The capsid, a defining feature of viruses, is a proteinaceous cover that envelops and safeguards the viral genetic substance.

  • Constituents: The capsid is meticulously assembled from individual protein units, termed capsomers.
  • Vital Functions:
    • Defence: The primary duty of the capsid is to shield the virus's genetic material from potential external threats, including harsh environmental conditions and host defensive mechanisms.
    • Invasion Assistance: Certain capsids are armed with special structures that bolster the virus's capability to latch onto host cells, thus streamlining the invasion process.
  • Diversity in Configuration:
    • Helical Form: Resembling cylinders or rods, these capsids wrap around the genetic material. Tobacco mosaic virus is a prime example.
    • Icosahedral Design: Exhibiting a near-spherical contour, viruses like Adenoviruses and Poliovirus fall under this category.
    • Complex Architecture: These capsids don't conform to the traditional helical or icosahedral frameworks but might present a combination or additional intricate structures. Bacteriophages, notorious for infecting bacteria, frequently showcase these sophisticated designs.
A diagram showing the structure of different types of viruses.

Image courtesy of VectorMine

Absence of Cytoplasm

While they commandeer certain biological attributes, viruses are devoid of fundamental cellular components, one of which is cytoplasm.

  • Cytoplasm's Role in Cells: In conventional cells, cytoplasm functions as a bustling hub of cellular activity. It not only accommodates various organelles but also acts as the venue for multiple metabolic reactions.
  • Viral Reliance: The absence of cytoplasm underscores a virus's dependence on its host. Since viruses are bereft of the metabolic machinery, they lean heavily on the host cell's cytoplasm to foster their life cycle events.

Limited Enzymes

Viruses are minimalist by nature when it comes to enzymes, carrying only a select few essential for their life cycle.

  • Host Reliance: Viruses exploit host cells for nearly all their needs. This parasitic lifestyle absolves them of the necessity to possess a diverse enzymatic repertoire.
  • Key Enzymes:
    • RNA-dependent RNA polymerase (RdRp): Pivotal for RNA viruses, this enzyme aids in replicating their RNA, a process not typically found in host cells.
    • Reverse Transcriptase: Exclusive to retroviruses like HIV, this enzyme transcribes viral RNA into DNA, which then integrates into the host genome.

FAQ

Viruses typically have either DNA or RNA as their genetic material, not both concurrently. However, some viruses can demonstrate a transitional state where they convert their RNA into DNA. Retroviruses, like HIV, are a classic example. They possess RNA as their genetic material, but upon infecting a host cell, they utilise the enzyme reverse transcriptase to transcribe this RNA into DNA. This DNA is then integrated into the host's genome. Nonetheless, it's crucial to understand that while these viruses can transition between RNA and DNA states, they don't contain both types of genetic material simultaneously.

While many viruses exhibit symmetrical structures, especially those with helical or icosahedral capsids, not all viruses conform to a symmetrical design. The notion of symmetry primarily pertains to the arrangement of protein subunits in the capsid. Some viruses, especially those with complex capsids, can exhibit asymmetry. A prime example is the bacteriophages, which possess an icosahedral 'head' and a cylindrical 'tail'. This combination of shapes results in an asymmetrical overall structure. The degree of symmetry or asymmetry often plays a role in how the virus interacts with its environment and host cells.

Viruses that possess a lipid envelope obtain this layer from the host cell during the viral budding process. These enveloped viruses acquire their lipid bilayers from portions of the host cell's membranes – it could be from the plasma membrane, nuclear membrane, or endoplembrane system, depending on the virus. As the newly formed viral particles exit the host cell, they 'bud' off from these membranes, wrapping themselves in a portion of the host's lipid bilayer. Embedded within this lipid envelope are viral proteins, which play a pivotal role in recognising and infecting subsequent host cells. This process allows viruses to effectively 'steal' a protective lipid coat without synthesising it themselves.

Viruses do not possess consciousness or the ability to 'know' in the way living organisms might. Instead, their behaviour is dictated by the interactions of their structural components with the environment. The activation and infection of a host by a virus are driven by chemical and physical interactions at the molecular level. When a virus comes into contact with a suitable host cell, its structural features, especially its surface proteins, interact with receptors on the host cell's surface. If the conditions are right and the interactions are favourable, the virus can enter and hijack the cell's machinery to replicate. This process is purely mechanistic and not driven by any conscious decision-making.

Viruses exhibit specificity when it comes to infecting host cells, primarily due to their surface proteins or glycoproteins. These proteins have evolved to recognise and bind to specific receptors on the surface of susceptible host cells. When the viral protein fits precisely with a host receptor, akin to a lock and key mechanism, the virus can attach and potentially enter the cell. This specificity ensures that a virus infects only particular types of cells. For instance, the HIV virus primarily targets CD4+ T cells because its surface protein, gp120, can specifically recognise and bind to the CD4 receptor on these cells.

Practice Questions

Describe the significance of the capsid in viruses and highlight its main types based on configuration.

The capsid plays a crucial role in protecting the genetic material of the virus from external threats, including environmental factors and host defence mechanisms. It is constructed from protein units called capsomers. Furthermore, the capsid can facilitate the virus's ability to attach to and invade host cells. Based on their configuration, capsids can be classified into three primary types: helical, icosahedral, and complex. Helical capsids are rod-shaped and wrap around the virus's genetic material, as seen in the Tobacco mosaic virus. Icosahedral capsids have a nearly spherical shape, typified by viruses like Adenoviruses. Complex capsids exhibit a combination of shapes or possess additional intricate structures, as observed in bacteriophages.

Explain why viruses have a limited enzymatic repertoire and mention a specific enzyme unique to certain RNA viruses, discussing its role.

Viruses have a limited enzymatic repertoire due to their reliance on host cells for most of their functional requirements. Being minimalist entities, they lack the machinery for various biological processes, including protein synthesis. As such, they exploit the metabolic processes of the host cell to further their life cycle. One enzyme that is unique to certain RNA viruses is the RNA-dependent RNA polymerase (RdRp). This enzyme is paramount for these viruses as it assists in replicating their RNA – a process that doesn't usually occur in host cells. By using RdRp, RNA viruses can synthesise complementary RNA strands, ensuring their propagation within the host.

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